Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG1279-RA through 18771 annotations produced 1 hits


tropomyosin-like (Rtnl2):

Annotation Number : CG1279
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015831
Gbrowse : chr3R:3355003-3355478 (-) // 100.0 //
Probeset : 1636571_at
Accessions : protein= NP_524263;, nucleotide= NM_079539;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation
FlyMine data for FBgn0015831.
VDRC has 2 RNAi stocks for FBgn0015831 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.00Down
Eye3 ± 10 of 4 0.08Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland8 ± 00 of 4 0.17Down
Crop4 ± 00 of 4 0.10Down
Midgut7 ± 20 of 4 0.10Down
Tubule4 ± 00 of 4 0.10Down
Hindgut4 ± 00 of 4 0.10Down
Heart3 ± 10 of 4 0.06Down
Fat body7 ± 40 of 4 0.15Down
Ovary3 ± 10 of 4 0.10Down
Testis519 ± 154 of 410.20Up
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca5 ± 10 of 4 0.10Down
Mated spermatheca3 ± 00 of 4 0.06Down
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS6 ± 10 of 4 0.12Down
Larval Salivary gland4 ± 10 of 4 0.09Down
Larval midgut4 ± 10 of 4 0.09Down
Larval tubule4 ± 20 of 4 0.10Down
Larval hindgut4 ± 01 of 4 0.09Down
Larval fat body109 ± 423 of 4 2.10None
Larval trachea9 ± 41 of 4 0.19Down
Larval carcass7 ± 10 of 4 0.14Down
S2 cells (growing)4 ± 00 of 4 0.08Down
Whole fly51 ± 34 of 4

Looking for CG1279-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime