FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG12799-RA through 18771 annotations produced 1 hits

Ubiquitin conjugating enzyme 84D (Ubc84D):

Annotation Number : CG12799
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0017456
Gbrowse : chr3R:3344618-3345080 (-) // 100.0 //
Probeset : 1633102_at
Accessions : protein= NP_524260;, nucleotide= NM_079536;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity //
FlyMine data for FBgn0017456.
Homophila reports that CG12799 is a close match (1e-14) to human gene RAD6A;UBE2A (NP_003327), a gene associated with Mental retardation, X-linked syndromic (3).
BioGrid reports that CG12799 interacts with CG3999 CG5576 CG5709 CG7486 CG1848 CG4303 .
VDRC has 2 RNAi stocks for FBgn0017456 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.00	Down
Head	2 ± 1	0 of 4	0.00	Down
Eye	1 ± 0	0 of 4	0.02	Down
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.00	Down
Salivary gland	2 ± 0	0 of 4	0.03	Down
Crop	32 ± 3	4 of 4	0.40	Down
Midgut	1 ± 0	0 of 4	0.00	Down
Tubule	2 ± 0	0 of 4	0.00	Down
Hindgut	2 ± 0	0 of 4	0.00	Down
Heart	0 ± 0	0 of 4	0.01	Down
Fat body	2 ± 1	0 of 4	0.03	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	1022 ± 39	4 of 4	12.70	Up
Male accessory glands	1 ± 0	0 of 4	0.00	Down
Virgin spermatheca	1 ± 0	0 of 4	0.02	Down
Mated spermatheca	0 ± 0	0 of 4	0.01	Down
Adult carcass	2 ± 0	0 of 4	0.00	Down
Larval CNS	1 ± 0	0 of 4	0.02	Down
Larval Salivary gland	2 ± 0	0 of 4	0.03	Down
Larval midgut	1 ± 0	0 of 4	0.02	Down
Larval tubule	1 ± 0	0 of 4	0.00	Down
Larval hindgut	1 ± 0	0 of 4	0.01	Down
Larval fat body	42 ± 27	1 of 4	0.50	None
Larval trachea	5 ± 5	0 of 4	0.07	Down
Larval carcass	1 ± 1	0 of 4	0.02	Down
S2 cells (growing)	15 ± 1	0 of 4	0.20	Down
Whole fly	80 ± 5	4 of 4

Looking for CG12799-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720