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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12800-RA through 18771 annotations produced 1 hits



Cyp6d4 (Cyp6d4):

Annotation Number : CG12800
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039006
Gbrowse : chr3R:18524046-18526034 (+) // 100.0 //
Probeset : 1630802_at
Accessions : protein= NP_651082;, nucleotide= NM_142825;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0039006.
BDGP gene expression has embryonic in situ data for Cyp6d4: 4 pix of staining in 1 body parts.
Homophila reports that CG12800 is a close match (3e-11) to human gene CYP11B2 (NP_000489), a gene associated with Aldosterone to renin ratio raised (3);Hypoaldosteronism, congenital, due to CMO I deficiency, 203400 (3);Hypoaldosteronism, congenital, due to CMO II deficiency, 610600 (3);{Low renin hypertension, susceptibility to} (3).
VDRC has 2 RNAi stocks for FBgn0039006 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 24 of 4 0.40Down
Head58 44 of 4 1.20None
Eye32 34 of 4 0.70None
Thoracicoabdominal ganglion23 34 of 4 0.50Down
Salivary gland43 53 of 4 0.91None
Crop87 44 of 4 1.90Up
Midgut458 84 of 4 9.70Up
Tubule38 44 of 4 0.80Down
Hindgut84 34 of 4 1.80Up
Heart92 34 of 4 1.96Up
Fat body101 74 of 4 2.15Up
Ovary26 64 of 4 0.60None
Testis14 24 of 4 0.30Down
Male accessory glands20 21 of 4 0.40Down
Virgin spermatheca94 34 of 4 1.99Up
Mated spermatheca81 74 of 4 1.73Up
Adult carcass60 34 of 4 1.30None
Larval CNS26 34 of 4 0.57Down
Larval Salivary gland22 24 of 4 0.47Down
Larval midgut461 474 of 4 9.78Up
Larval tubule44 14 of 4 0.90None
Larval hindgut65 34 of 4 1.39None
Larval fat body163 164 of 4 3.50Up
Larval trachea76 74 of 4 1.61Up
Larval carcass62 44 of 4 1.33None
S2 cells (growing)210 154 of 4 4.46Up
Whole fly47 64 of 4

Looking for CG12800-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime