Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12818-RA through 18771 annotations produced 1 hits



(CG12818):

Annotation Number : CG12818
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037809
Gbrowse : chr3R:6157302-6158321 (+) // 100.0 //
Probeset : 1633680_at
Accessions : protein= NP_649996;, nucleotide= NM_141739;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037809.
BioGrid reports that CG12818 interacts with CG17153 .
VDRC has 2 RNAi stocks for FBgn0037809 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 ± 14 of 4 1.10None
Head37 ± 34 of 4 0.70Down
Eye35 ± 14 of 4 0.66Down
Thoracicoabdominal ganglion47 ± 24 of 4 0.90None
Salivary gland58 ± 54 of 4 1.08None
Crop52 ± 14 of 4 1.00None
Midgut58 ± 14 of 4 1.10None
Tubule28 ± 13 of 4 0.50Down
Hindgut41 ± 04 of 4 0.80Down
Heart45 ± 24 of 4 0.85Down
Fat body46 ± 74 of 4 0.86None
Ovary99 ± 44 of 4 1.90Up
Testis37 ± 04 of 4 0.70Down
Male accessory glands48 ± 34 of 4 0.90None
Virgin spermatheca29 ± 24 of 4 0.54Down
Mated spermatheca30 ± 34 of 4 0.56Down
Adult carcass36 ± 53 of 4 0.70Down
Larval CNS45 ± 44 of 4 0.84Down
Larval Salivary gland49 ± 44 of 4 0.92None
Larval midgut31 ± 24 of 4 0.58Down
Larval tubule53 ± 14 of 4 1.00None
Larval hindgut41 ± 14 of 4 0.77Down
Larval fat body50 ± 24 of 4 0.90None
Larval trachea50 ± 44 of 4 0.95None
Larval carcass27 ± 34 of 4 0.52Down
S2 cells (growing)59 ± 24 of 4 1.11None
Whole fly53 ± 14 of 4

Looking for CG12818-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime