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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12821-RA through 18771 annotations produced 1 hits



(CG12821):

Annotation Number : CG12821
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040780
Gbrowse : chr2R:3721689-3722083 (+) // 100.0 //
Probeset : 1627107_at
Accessions : protein= NP_001097215; /// NP_001097216;, nucleotide= NM_001103745; /// NM_001103746;
FlyMine data for FBgn0040780.
TRiP has 1 RNAi stocks for FBgn0040780 available for purchase.
VDRC has 1 RNAi stocks for FBgn0040780 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 00 of 4 0.60None
Head16 ± 20 of 4 0.70None
Eye13 ± 10 of 4 0.58None
Thoracicoabdominal ganglion10 ± 30 of 4 0.50None
Salivary gland26 ± 40 of 4 1.16None
Crop34 ± 31 of 4 1.50Up
Midgut23 ± 20 of 4 1.10None
Tubule17 ± 10 of 4 0.80Down
Hindgut22 ± 21 of 4 1.00None
Heart26 ± 20 of 4 1.18None
Fat body27 ± 60 of 4 1.23None
Ovary30 ± 43 of 4 1.40None
Testis3 ± 10 of 4 0.20Down
Male accessory glands16 ± 30 of 4 0.70None
Virgin spermatheca16 ± 10 of 4 0.73None
Mated spermatheca18 ± 10 of 4 0.82None
Adult carcass34 ± 10 of 4 1.50Up
Larval CNS32 ± 20 of 4 1.46None
Larval Salivary gland34 ± 20 of 4 1.54Up
Larval midgut10 ± 30 of 4 0.48None
Larval tubule19 ± 00 of 4 0.90None
Larval hindgut24 ± 10 of 4 1.10None
Larval fat body29 ± 10 of 4 1.30None
Larval trachea52 ± 34 of 4 2.32Up
Larval carcass37 ± 11 of 4 1.68Up
S2 cells (growing)32 ± 11 of 4 1.43None
Whole fly22 ± 31 of 4

Looking for CG12821-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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