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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12822-RA through 18771 annotations produced 1 hits



/// (CG12821 /// CG12822):

Annotation Number : CG12822
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033229 /// FBgn0040780
Gbrowse : chr2R:3719677-3721346 (+) // 100.0 // /// chr2R:3716567-3717355 (+) // 42.04 //
Probeset : 1641689_at
Accessions : protein= NP_001097215; /// NP_001097216; /// NP_610327; /// NP_995774;, nucleotide= NM_001103745; /// NM_001103746; /// NM_136483; /// NM_206052;
FlyMine data for FBgn0033229 /// FBgn0040780.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain494 ± 134 of 4 5.50Up
Head182 ± 44 of 4 2.00Up
Eye179 ± 54 of 4 1.99Up
Thoracicoabdominal ganglion516 ± 124 of 4 5.70Up
Salivary gland219 ± 94 of 4 2.44Up
Crop152 ± 34 of 4 1.70Up
Midgut96 ± 34 of 4 1.10None
Tubule107 ± 14 of 4 1.20Up
Hindgut128 ± 64 of 4 1.40Up
Heart110 ± 24 of 4 1.23Up
Fat body122 ± 184 of 4 1.37Up
Ovary112 ± 34 of 4 1.30Up
Testis32 ± 14 of 4 0.40Down
Male accessory glands151 ± 114 of 4 1.70Up
Virgin spermatheca142 ± 64 of 4 1.59Up
Mated spermatheca148 ± 74 of 4 1.65Up
Adult carcass159 ± 24 of 4 1.80Up
Larval CNS197 ± 194 of 4 2.20Up
Larval Salivary gland81 ± 14 of 4 0.91None
Larval midgut77 ± 34 of 4 0.86None
Larval tubule58 ± 34 of 4 0.60Down
Larval hindgut77 ± 44 of 4 0.86None
Larval fat body50 ± 54 of 4 0.60Down
Larval trachea141 ± 114 of 4 1.57Up
Larval carcass82 ± 54 of 4 0.92None
S2 cells (growing)192 ± 24 of 4 2.14Up
Whole fly89 ± 44 of 4

Looking for CG12822-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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