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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12861-RA through 18771 annotations produced 1 hits



(CG12861):

Annotation Number : CG12861
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033953
Gbrowse : chr2R:10551750-10552856 (-) // 100.0 //
Probeset : 1636473_at
Accessions : protein= NP_610978;, nucleotide= NM_137134;
FlyMine data for FBgn0033953.
BDGP gene expression has embryonic in situ data for CG12861: 2 pix of staining in 1 body parts.
BioGrid reports that CG12861 interacts with CG16884 CG4276 CG9941 .
VDRC has 3 RNAi stocks for FBgn0033953 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.00Down
Head6 ± 50 of 4 0.00Down
Eye4 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion8 ± 20 of 4 0.00Down
Salivary gland19 ± 40 of 4 0.02Down
Crop9 ± 20 of 4 0.00Down
Midgut17 ± 01 of 4 0.00Down
Tubule13 ± 20 of 4 0.00Down
Hindgut14 ± 20 of 4 0.00Down
Heart2 ± 10 of 4 0.00Down
Fat body23 ± 60 of 4 0.03Down
Ovary3 ± 10 of 4 0.00Down
Testis3381 ± 1644 of 4 3.80Up
Male accessory glands5 ± 10 of 4 0.00Down
Virgin spermatheca10 ± 20 of 4 0.01Down
Mated spermatheca18 ± 41 of 4 0.02Down
Adult carcass53 ± 93 of 4 0.10Down
Larval CNS6 ± 10 of 4 0.01Down
Larval Salivary gland13 ± 10 of 4 0.01Down
Larval midgut13 ± 40 of 4 0.02Down
Larval tubule9 ± 10 of 4 0.00Down
Larval hindgut8 ± 20 of 4 0.01Down
Larval fat body525 ± 3064 of 4 0.60None
Larval trachea32 ± 472 of 4 0.04Down
Larval carcass5 ± 10 of 4 0.01Down
S2 cells (growing)6 ± 10 of 4 0.01Down
Whole fly890 ± 464 of 4

Looking for CG12861-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime