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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12872-RA through 18771 annotations produced 1 hits



CG12870 (CG34362):

Annotation Number : CG12872
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085391
Gbrowse : chr3R:23856409-23857284 (+) // 100.0 //
Probeset : 1630576_at
Accessions : protein= NP_001097951; /// NP_001163754; /// NP_651609;, nucleotide= NM_001104481; /// NM_001170283; /// NM_143352;
Pathway : via spliceosome // inferred from mutant phenotype"
FlyMine data for FBgn0085391.
VDRC has 3 RNAi stocks for FBgn0085391 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 22 of 4 4.50Up
Head2 ± 00 of 4 0.50None
Eye2 ± 10 of 4 0.69None
Thoracicoabdominal ganglion17 ± 42 of 4 4.40None
Salivary gland6 ± 20 of 4 1.69None
Crop3 ± 10 of 4 0.80None
Midgut10 ± 00 of 4 2.70Up
Tubule3 ± 00 of 4 0.70Down
Hindgut2 ± 10 of 4 0.70None
Heart4 ± 01 of 4 1.21None
Fat body3 ± 20 of 4 0.74None
Ovary2 ± 10 of 4 0.70None
Testis2 ± 00 of 4 0.60None
Male accessory glands7 ± 40 of 4 1.80None
Virgin spermatheca2 ± 00 of 4 0.69None
Mated spermatheca3 ± 10 of 4 0.88None
Adult carcass11 ± 10 of 4 2.90Up
Larval CNS10 ± 23 of 4 2.53Up
Larval Salivary gland11 ± 11 of 4 2.75Up
Larval midgut9 ± 20 of 4 2.40None
Larval tubule6 ± 00 of 4 1.50Up
Larval hindgut2 ± 10 of 4 0.64None
Larval fat body4 ± 21 of 4 1.20None
Larval trachea3 ± 00 of 4 0.92None
Larval carcass4 ± 10 of 4 1.05None
S2 cells (growing)4 ± 00 of 4 1.12None
Whole fly4 ± 00 of 4

Looking for CG12872-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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