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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12878-RA through 18771 annotations produced 1 hits



barentsz (btz):

Annotation Number : CG12878
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0045862
Gbrowse : chr3R:23525985-23529174 (+) // 100.0 //
Probeset : 1637956_s_at
Accessions : protein= NP_524534; /// NP_733229;, nucleotide= NM_079810; /// NM_170350;
Pathway : 0005635 // nuclear envelope // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay
FlyMine data for FBgn0045862.
BioGrid reports that CG12878 interacts with CG7012 .
TRiP has 1 RNAi stocks for FBgn0045862 available for purchase.
VDRC has 3 RNAi stocks for FBgn0045862 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain115 ± 24 of 4 1.00None
Head70 ± 44 of 4 0.60Down
Eye103 ± 04 of 4 0.93None
Thoracicoabdominal ganglion94 ± 44 of 4 0.80Down
Salivary gland140 ± 64 of 4 1.25Up
Crop96 ± 24 of 4 0.90None
Midgut59 ± 24 of 4 0.50Down
Tubule85 ± 44 of 4 0.80Down
Hindgut72 ± 34 of 4 0.60Down
Heart61 ± 34 of 4 0.55Down
Fat body73 ± 44 of 4 0.65Down
Ovary226 ± 34 of 4 2.00Up
Testis33 ± 24 of 4 0.30Down
Male accessory glands99 ± 44 of 4 0.90None
Virgin spermatheca97 ± 74 of 4 0.87None
Mated spermatheca95 ± 44 of 4 0.85None
Adult carcass61 ± 64 of 4 0.60Down
Larval CNS148 ± 144 of 4 1.33Up
Larval Salivary gland165 ± 84 of 4 1.48Up
Larval midgut70 ± 54 of 4 0.62Down
Larval tubule78 ± 34 of 4 0.70Down
Larval hindgut107 ± 24 of 4 0.96None
Larval fat body51 ± 24 of 4 0.50Down
Larval trachea110 ± 74 of 4 0.98None
Larval carcass100 ± 34 of 4 0.89None
S2 cells (growing)79 ± 24 of 4 0.71Down
Whole fly112 ± 54 of 4

Looking for CG12878-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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