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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12898-RA through 18771 annotations produced 1 hits


Annotation Number : CG12898
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033516
Gbrowse : chr2R:6294479-6294950 (-) // 100.0 //
Probeset : 1639840_at
Accessions : protein= NP_610581;, nucleotide= NM_136737;
FlyMine data for FBgn0033516.
VDRC has 1 RNAi stocks for FBgn0033516 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.80None
Head3 10 of 4 1.70None
Eye3 10 of 4 1.81None
Thoracicoabdominal ganglion1 00 of 4 0.80None
Salivary gland2 10 of 4 1.52None
Crop3 10 of 4 2.10None
Midgut4 10 of 4 2.60None
Tubule4 10 of 4 2.40None
Hindgut2 10 of 4 1.50None
Heart3 10 of 4 2.04None
Fat body5 41 of 4 3.00None
Ovary1 00 of 4 0.80None
Testis1 00 of 4 1.00None
Male accessory glands3 10 of 4 1.80None
Virgin spermatheca3 10 of 4 1.84None
Mated spermatheca3 10 of 4 2.15None
Adult carcass5 20 of 4 2.90None
Larval CNS2 11 of 4 1.55None
Larval Salivary gland6 10 of 4 3.29None
Larval midgut4 20 of 4 2.21None
Larval tubule2 00 of 4 1.10None
Larval hindgut5 21 of 4 2.79None
Larval fat body7 30 of 4 4.00None
Larval trachea2 20 of 4 1.56None
Larval carcass3 00 of 4 1.73None
S2 cells (growing)2 10 of 4 1.59None
Whole fly1 00 of 4

Looking for CG12898-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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