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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12900-RA through 18771 annotations produced 1 hits

CG12900 (Ir47a):

Annotation Number : CG12900
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033515
Gbrowse : chr2R:6264632-6267614 (-) // 100.0 //
Probeset : 1624917_at
Accessions : protein= NP_610580;, nucleotide= NM_136736;
FlyMine data for FBgn0033515.
BDGP gene expression has embryonic in situ data for CG12900: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0033515 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 2.00None
Head1 00 of 4 1.10None
Eye1 00 of 4 1.25None
Thoracicoabdominal ganglion1 00 of 4 1.50None
Salivary gland7 30 of 4 6.39None
Crop0 00 of 4 0.70None
Midgut2 00 of 4 2.00None
Tubule2 00 of 4 1.80Up
Hindgut1 00 of 4 1.30None
Heart1 00 of 4 1.16None
Fat body3 20 of 4 2.82None
Ovary1 00 of 4 0.90None
Testis1 00 of 4 1.00None
Male accessory glands1 00 of 4 1.70None
Virgin spermatheca0 00 of 4 0.45None
Mated spermatheca0 00 of 4 0.43None
Adult carcass1 00 of 4 1.00None
Larval CNS1 10 of 4 1.11None
Larval Salivary gland1 00 of 4 1.30None
Larval midgut2 00 of 4 2.50None
Larval tubule1 00 of 4 0.90None
Larval hindgut2 00 of 4 2.18None
Larval fat body2 10 of 4 2.00None
Larval trachea1 10 of 4 1.80None
Larval carcass0 00 of 4 0.89None
S2 cells (growing)0 00 of 4 0.43None
Whole fly1 00 of 4

Looking for CG12900-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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