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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG1291-RA through 18771 annotations produced 1 hits


Annotation Number : CG1291
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035401
Gbrowse : chr3L:3143809-3145274 (+) // 100.0 //
Probeset : 1625755_at
Accessions : protein= NP_647772;, nucleotide= NM_139515;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : "0004376 // glycolipid mannosyltransferase activity // inferred from sequence or structural similarity /// 0016740 // tr
FlyMine data for FBgn0035401.
BDGP gene expression has embryonic in situ data for CG1291: 12 pix of staining in 8 body parts.
Homophila reports that CG1291 is a close match (1e-105) to human gene ALG2;CDGII (NP_149078), a gene associated with Congenital disorder of glycosylation, type Ii, 607906 (3).
VDRC has 1 RNAi stocks for FBgn0035401 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 14 of 4 0.70Down
Head71 24 of 4 1.00None
Eye122 34 of 4 1.67Up
Thoracicoabdominal ganglion98 84 of 4 1.30None
Salivary gland995 764 of 413.49Up
Crop83 64 of 4 1.10None
Midgut169 54 of 4 2.30Up
Tubule121 104 of 4 1.60Up
Hindgut81 24 of 4 1.10None
Heart86 64 of 4 1.17None
Fat body94 74 of 4 1.29Up
Ovary86 44 of 4 1.20None
Testis29 14 of 4 0.40Down
Male accessory glands983 364 of 413.30Up
Virgin spermatheca184 64 of 4 2.50Up
Mated spermatheca218 184 of 4 2.96Up
Adult carcass79 64 of 4 1.10None
Larval CNS71 54 of 4 0.97None
Larval Salivary gland482 224 of 4 6.54Up
Larval midgut187 74 of 4 2.53Up
Larval tubule216 94 of 4 2.90Up
Larval hindgut104 64 of 4 1.42Up
Larval fat body233 284 of 4 3.20Up
Larval trachea79 64 of 4 1.08None
Larval carcass88 74 of 4 1.19None
S2 cells (growing)228 64 of 4 3.10Up
Whole fly73 24 of 4

Looking for CG1291-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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