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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12917-RA through 18771 annotations produced 1 hits


(CG12917):

Annotation Number : CG12917
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033490
Gbrowse : chr2R:6025483-6026504 (+) // 100.0 //
Probeset : 1627077_at
Accessions : protein= NP_610558;, nucleotide= NM_136714;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred fro
FlyMine data for FBgn0033490.
VDRC has 3 RNAi stocks for FBgn0033490 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye2 ± 00 of 4 0.09Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland9 ± 41 of 4 0.40Down
Crop3 ± 10 of 4 0.20Down
Midgut2 ± 10 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart2 ± 10 of 4 0.12Down
Fat body3 ± 30 of 4 0.17Down
Ovary1 ± 00 of 4 0.10Down
Testis296 ± 164 of 412.90Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.14Down
Mated spermatheca3 ± 10 of 4 0.17Down
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.04Down
Larval Salivary gland3 ± 10 of 4 0.15Down
Larval midgut1 ± 00 of 4 0.06Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.03Down
Larval fat body20 ± 101 of 4 0.90None
Larval trachea2 ± 10 of 4 0.12Down
Larval carcass1 ± 00 of 4 0.06Down
S2 cells (growing)1 ± 00 of 4 0.05Down
Whole fly22 ± 24 of 4

Looking for CG12917-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime