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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG12926-RA through 18771 annotations produced 1 hits


Annotation Number : CG12926
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033437
Gbrowse : chr2R:5495631-5497789 (-) // 100.0 //
Probeset : 1628625_at
Accessions : protein= NP_610510;, nucleotide= NM_136666;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008431 // vitamin E binding // inferred from
FlyMine data for FBgn0033437.
BDGP gene expression has embryonic in situ data for CG12926: 13 pix of staining in 5 body parts.
Homophila reports that CG12926 is a close match (3e-17) to human gene AVED;TTP1;TTPA (NP_000361), a gene associated with Ataxia with isolated vitamin E deficiency, 277460 (3).
VDRC has 2 RNAi stocks for FBgn0033437 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain237 104 of 4 5.00Up
Head120 74 of 4 2.50Up
Eye123 54 of 4 2.60Up
Thoracicoabdominal ganglion273 124 of 4 5.70Up
Salivary gland12 20 of 4 0.26Down
Crop12 00 of 4 0.30Down
Midgut287 154 of 4 6.00Up
Tubule145 84 of 4 3.00Up
Hindgut136 34 of 4 2.90Up
Heart14 21 of 4 0.30Down
Fat body15 60 of 4 0.33Down
Ovary2 10 of 4 0.10Down
Testis20 04 of 4 0.40Down
Male accessory glands34 40 of 4 0.70None
Virgin spermatheca14 30 of 4 0.31Down
Mated spermatheca9 00 of 4 0.20Down
Adult carcass41 50 of 4 0.90None
Larval CNS154 174 of 4 3.25Up
Larval Salivary gland11 20 of 4 0.24Down
Larval midgut376 364 of 4 7.91Up
Larval tubule378 44 of 4 7.90Up
Larval hindgut143 154 of 4 3.01Up
Larval fat body1928 2494 of 440.40Up
Larval trachea37 24 of 4 0.78Down
Larval carcass12 10 of 4 0.26Down
S2 cells (growing)18 22 of 4 0.39Down
Whole fly47 04 of 4

Looking for CG12926-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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