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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12943-RA through 18771 annotations produced 1 hits



(CG12943):

Annotation Number : CG12943
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033572
Gbrowse : chr2R:6791165-6792996 (+) // 100.0 //
Probeset : 1636871_at
Accessions : protein= NP_001097264; /// NP_610631;, nucleotide= NM_001103794; /// NM_136787;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0033572.
VDRC has 2 RNAi stocks for FBgn0033572 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head0 ± 00 of 4 0.10Down
Eye1 ± 10 of 4 0.14Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.10Down
Salivary gland4 ± 10 of 4 0.36Down
Crop2 ± 10 of 4 0.20Down
Midgut2 ± 10 of 4 0.20Down
Tubule2 ± 00 of 4 0.20Down
Hindgut1 ± 10 of 4 0.20Down
Heart1 ± 00 of 4 0.10Down
Fat body2 ± 20 of 4 0.25Down
Ovary1 ± 00 of 4 0.10Down
Testis166 ± 164 of 414.30Up
Male accessory glands6 ± 20 of 4 0.50None
Virgin spermatheca2 ± 10 of 4 0.21Down
Mated spermatheca4 ± 20 of 4 0.40Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS3 ± 10 of 4 0.28Down
Larval Salivary gland3 ± 10 of 4 0.26Down
Larval midgut3 ± 10 of 4 0.28Down
Larval tubule1 ± 10 of 4 0.20Down
Larval hindgut1 ± 00 of 4 0.15Down
Larval fat body21 ± 122 of 4 1.80None
Larval trachea3 ± 10 of 4 0.32Down
Larval carcass2 ± 10 of 4 0.23Down
S2 cells (growing)1 ± 00 of 4 0.14Down
Whole fly11 ± 02 of 4

Looking for CG12943-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime