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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12944-RA through 18771 annotations produced 1 hits



Odorant-binding protein 47a (Obp47a):

Annotation Number : CG12944
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033573
Gbrowse : chr2R:6797427-6797990 (+) // 100.0 //
Probeset : 1632938_at
Accessions : protein= NP_610632; /// NP_995810;, nucleotide= NM_136788; /// NM_206088;
Interpro : 0005549 // odorant binding // not recorded /// 0005549 // odorant binding // inferred from sequence or structural simila
FlyMine data for FBgn0033573.
VDRC has 3 RNAi stocks for FBgn0033573 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 1.20None
Head2 ± 10 of 4 3.80None
Eye1 ± 00 of 4 1.33None
Thoracicoabdominal ganglion3 ± 00 of 4 4.00None
Salivary gland4 ± 00 of 4 5.90Up
Crop5 ± 20 of 4 7.80None
Midgut2 ± 00 of 4 2.90Up
Tubule6 ± 00 of 4 8.20Up
Hindgut3 ± 00 of 4 4.70Up
Heart4 ± 00 of 4 5.70Up
Fat body3 ± 20 of 4 5.03None
Ovary2 ± 00 of 4 2.60None
Testis2 ± 10 of 4 3.50None
Male accessory glands2 ± 10 of 4 3.40None
Virgin spermatheca5 ± 20 of 4 6.90None
Mated spermatheca8 ± 00 of 410.90Up
Adult carcass6 ± 20 of 4 8.90None
Larval CNS2 ± 00 of 4 3.83Up
Larval Salivary gland11 ± 10 of 414.70Up
Larval midgut1 ± 00 of 4 2.00None
Larval tubule3 ± 10 of 4 4.20None
Larval hindgut2 ± 00 of 4 3.57Up
Larval fat body2 ± 00 of 4 3.40None
Larval trachea2 ± 10 of 4 3.97None
Larval carcass1 ± 00 of 4 2.00None
S2 cells (growing)2 ± 00 of 4 2.90None
Whole fly0 ± 00 of 4

Looking for CG12944-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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