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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12950-RA through 18771 annotations produced 1 hits



(CG12950):

Annotation Number : CG12950
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037736
Gbrowse : chr3R:5560559-5565651 (-) // 100.0 //
Probeset : 1627923_at
Accessions : protein= NP_649933;, nucleotide= NM_141676;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0037736.
BDGP gene expression has embryonic in situ data for CG12950: 14 pix of staining in 4 body parts.
Homophila reports that CG12950 is a close match (8e-13) to human gene ARMD1;FBLN6;FIBL6;HMCN1 (NP_114141), a gene associated with {Macular degeneration, age-related, 1}, 603075 (3).
VDRC has 2 RNAi stocks for FBgn0037736 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain184 74 of 438.50Up
Head33 24 of 4 7.00Up
Eye13 14 of 4 2.80Up
Thoracicoabdominal ganglion85 34 of 417.70Up
Salivary gland2 00 of 4 0.51None
Crop9 30 of 4 2.00None
Midgut1 00 of 4 0.30None
Tubule3 00 of 4 0.70Down
Hindgut4 10 of 4 1.00None
Heart1 00 of 4 0.39None
Fat body4 30 of 4 1.01None
Ovary2 10 of 4 0.50None
Testis32 14 of 4 6.80Up
Male accessory glands2 00 of 4 0.50None
Virgin spermatheca1 00 of 4 0.33None
Mated spermatheca1 00 of 4 0.22None
Adult carcass5 10 of 4 1.10None
Larval CNS84 94 of 417.69Up
Larval Salivary gland2 00 of 4 0.58None
Larval midgut2 00 of 4 0.44None
Larval tubule13 20 of 4 2.90Up
Larval hindgut4 00 of 4 0.84None
Larval fat body11 20 of 4 2.30None
Larval trachea2 00 of 4 0.42None
Larval carcass2 00 of 4 0.48None
S2 cells (growing)4 10 of 4 0.83None
Whole fly4 10 of 4

Looking for CG12950-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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