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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12951-RA through 18771 annotations produced 1 hits



(CG12951):

Annotation Number : CG12951
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037677
Gbrowse : chr3R:5154997-5156047 (-) // 100.0 //
Probeset : 1637279_at
Accessions : protein= NP_649880;, nucleotide= NM_141623;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0037677.
Homophila reports that CG12951 is a close match (6e-11) to human gene DFNB10;DFNB8;ECHOS1;TMPRSS3 (NP_115781), a gene associated with Deafness, autosomal recessive 10, congenital, 605316 (3);Deafness, autosomal recessive 8, childhood onset, 601072 (3).
VDRC has 3 RNAi stocks for FBgn0037677 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 01 of 4 0.60None
Head6 ± 11 of 4 1.00None
Eye1 ± 10 of 4 0.26None
Thoracicoabdominal ganglion7 ± 00 of 4 1.00None
Salivary gland10 ± 30 of 4 1.47None
Crop5 ± 10 of 4 0.80None
Midgut13 ± 12 of 4 2.00None
Tubule4 ± 00 of 4 0.60Down
Hindgut5 ± 13 of 4 0.80None
Heart5 ± 12 of 4 0.81None
Fat body10 ± 12 of 4 1.49None
Ovary2 ± 00 of 4 0.40None
Testis3 ± 00 of 4 0.50None
Male accessory glands12 ± 01 of 4 1.80None
Virgin spermatheca2 ± 00 of 4 0.38None
Mated spermatheca4 ± 00 of 4 0.68None
Adult carcass14 ± 32 of 4 2.10None
Larval CNS2 ± 11 of 4 0.31None
Larval Salivary gland3 ± 10 of 4 0.49None
Larval midgut152 ± 1034 of 422.30None
Larval tubule7 ± 01 of 4 1.10None
Larval hindgut3 ± 01 of 4 0.52None
Larval fat body9 ± 20 of 4 1.40None
Larval trachea2 ± 20 of 4 0.44None
Larval carcass4 ± 11 of 4 0.72None
S2 cells (growing)3 ± 10 of 4 0.55None
Whole fly6 ± 21 of 4

Looking for CG12951-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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