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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12977-RA through 18771 annotations produced 1 hits



CG12976 (CG42337):

Annotation Number : CG12977
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259239
Gbrowse : chr3L:21177761-21179775 (-) // 100.0 //
Probeset : 1626529_at
Accessions : protein= NP_649286;, nucleotide= NM_141029;
FlyMine data for FBgn0259239.
VDRC has 4 RNAi stocks for FBgn0259239 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 ± 14 of 410.00Up
Head17 ± 33 of 4 2.40Up
Eye8 ± 10 of 4 1.11None
Thoracicoabdominal ganglion41 ± 34 of 4 5.70Up
Salivary gland5 ± 20 of 4 0.78None
Crop4 ± 00 of 4 0.50None
Midgut4 ± 10 of 4 0.60None
Tubule1 ± 00 of 4 0.20Down
Hindgut3 ± 10 of 4 0.50None
Heart3 ± 10 of 4 0.46None
Fat body5 ± 40 of 4 0.70None
Ovary1 ± 00 of 4 0.10None
Testis3 ± 00 of 4 0.40None
Male accessory glands2 ± 10 of 4 0.40None
Virgin spermatheca5 ± 10 of 4 0.75None
Mated spermatheca3 ± 00 of 4 0.42None
Adult carcass24 ± 24 of 4 3.30Up
Larval CNS21 ± 34 of 4 2.92Up
Larval Salivary gland1 ± 10 of 4 0.26None
Larval midgut2 ± 10 of 4 0.38None
Larval tubule1 ± 00 of 4 0.30None
Larval hindgut2 ± 10 of 4 0.35None
Larval fat body2 ± 00 of 4 0.30None
Larval trachea2 ± 20 of 4 0.40None
Larval carcass2 ± 00 of 4 0.28None
S2 cells (growing)1 ± 00 of 4 0.26None
Whole fly7 ± 21 of 4

Looking for CG12977-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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