Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG12993-RA through 18771 annotations produced 1 hits



presidents-cup (p-cup):

Annotation Number : CG12993
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030840
Gbrowse : chrX:17340380-17342807 (-) // 100.0 //
Probeset : 1628072_at
Accessions : protein= NP_573216;, nucleotide= NM_132988;
FlyMine data for FBgn0030840.
BDGP gene expression has embryonic in situ data for CG12993: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0030840 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye3 ± 10 of 4 0.24Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.20Down
Salivary gland11 ± 40 of 4 0.72None
Crop9 ± 10 of 4 0.60None
Midgut8 ± 20 of 4 0.60None
Tubule3 ± 00 of 4 0.20Down
Hindgut3 ± 20 of 4 0.20Down
Heart2 ± 00 of 4 0.19Down
Fat body14 ± 110 of 4 0.98None
Ovary2 ± 00 of 4 0.20Down
Testis238 ± 114 of 415.70Up
Male accessory glands8 ± 20 of 4 0.50None
Virgin spermatheca4 ± 10 of 4 0.27Down
Mated spermatheca7 ± 10 of 4 0.48Down
Adult carcass4 ± 10 of 4 0.30Down
Larval CNS9 ± 42 of 4 0.61None
Larval Salivary gland6 ± 10 of 4 0.41Down
Larval midgut11 ± 40 of 4 0.73None
Larval tubule4 ± 20 of 4 0.30Down
Larval hindgut6 ± 10 of 4 0.43Down
Larval fat body25 ± 82 of 4 1.70None
Larval trachea5 ± 30 of 4 0.37Down
Larval carcass8 ± 00 of 4 0.56Down
S2 cells (growing)3 ± 10 of 4 0.21Down
Whole fly15 ± 20 of 4

Looking for CG12993-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime