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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1303-RA through 18771 annotations produced 1 hits



O-6-alkylguanine-DNA alkyltransferase (agt):

Annotation Number : CG1303
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024912
Gbrowse : chr3R:2485127-2485822 (-) // 100.0 //
Probeset : 1639904_at
Accessions : protein= NP_477366;, nucleotide= NM_058018;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003908 // methylated-DNA-[protein]-cysteine S-
FlyMine data for FBgn0024912.
BDGP gene expression has embryonic in situ data for agt: 6 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0024912 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain71 ± 14 of 4 1.20Up
Head61 ± 44 of 4 1.10None
Eye98 ± 34 of 4 1.73Up
Thoracicoabdominal ganglion70 ± 44 of 4 1.20None
Salivary gland86 ± 54 of 4 1.51Up
Crop49 ± 34 of 4 0.90None
Midgut59 ± 24 of 4 1.00None
Tubule44 ± 24 of 4 0.80Down
Hindgut69 ± 14 of 4 1.20Up
Heart49 ± 54 of 4 0.87None
Fat body40 ± 34 of 4 0.71Down
Ovary84 ± 34 of 4 1.50Up
Testis14 ± 13 of 4 0.30Down
Male accessory glands115 ± 124 of 4 2.00Up
Virgin spermatheca25 ± 34 of 4 0.45Down
Mated spermatheca32 ± 24 of 4 0.57Down
Adult carcass58 ± 34 of 4 1.00None
Larval CNS71 ± 104 of 4 1.25None
Larval Salivary gland57 ± 44 of 4 1.01None
Larval midgut32 ± 34 of 4 0.56Down
Larval tubule67 ± 44 of 4 1.20None
Larval hindgut58 ± 24 of 4 1.02None
Larval fat body21 ± 21 of 4 0.40Down
Larval trachea98 ± 194 of 4 1.72Up
Larval carcass38 ± 33 of 4 0.67Down
S2 cells (growing)171 ± 14 of 4 3.01Up
Whole fly57 ± 14 of 4

Looking for CG1303-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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