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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG13030-RA through 18771 annotations produced 1 hits

sina homologue (sinah):

Annotation Number : CG13030
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259794
Gbrowse : chr3L:16852179-16853627 (+) // 100.0 //
Probeset : 1638838_at
Accessions : protein= NP_648927;, nucleotide= NM_140670;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // in
FlyMine data for FBgn0259794.
BioGrid reports that CG13030 interacts with CG17826 CG1856 CG1965 CG2147 CG30044 CG31160 CG3265 CG3358 CG3736 CG4832 CG5442 CG6652 CG7224 CG7752 CG8301 CG8929 CG9715 CG13032 CG13040 CG13285 CG13580 CG14125 CG14643 CG14712 CG15071 CG15308 CG15899 CG17265 CG17323 CG17870 CG18004 CG2160 CG2216 CG3020 CG31258 CG31374 CG32356 CG33169 CG3510 CG4276 CG4282 Dmel CG34168 CG5111 CG5933 CG6534 CG6544 CG7417 CG7447 CG8367 CG8615 CG8900 CG9394 CG9412 CG9666 CG1683 CG16944 CG31359 CG18743 CG31449 CG5834 CG6489 CG31366 .
VDRC has 2 RNAi stocks for FBgn0259794 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye2 00 of 4 0.02Down
Thoracicoabdominal ganglion4 10 of 4 0.00Down
Salivary gland12 30 of 4 0.09Down
Crop1 00 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart3 10 of 4 0.03Down
Fat body7 30 of 4 0.05Down
Ovary2 10 of 4 0.00Down
Testis1367 494 of 410.20Up
Male accessory glands5 20 of 4 0.00Down
Virgin spermatheca2 00 of 4 0.02Down
Mated spermatheca2 00 of 4 0.02Down
Adult carcass10 20 of 4 0.10Down
Larval CNS1 00 of 4 0.01Down
Larval Salivary gland2 00 of 4 0.02Down
Larval midgut0 00 of 4 0.01Down
Larval tubule3 10 of 4 0.00Down
Larval hindgut3 10 of 4 0.02Down
Larval fat body125 584 of 4 0.90None
Larval trachea6 61 of 4 0.05Down
Larval carcass1 00 of 4 0.01Down
S2 cells (growing)3 10 of 4 0.02Down
Whole fly133 54 of 4

Looking for CG13030-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime