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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13033-RA through 18771 annotations produced 1 hits



(CG13033):

Annotation Number : CG13033
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036638
Gbrowse : chr3L:16537665-16538725 (-) // 100.0 //
Probeset : 1630758_at
Accessions : protein= NP_648902;, nucleotide= NM_140645;
FlyMine data for FBgn0036638.
BDGP gene expression has embryonic in situ data for CG13033: 29 pix of staining in 4 body parts.
VDRC has 3 RNAi stocks for FBgn0036638 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 13 of 4 0.40None
Head18 ± 10 of 4 0.50None
Eye2 ± 00 of 4 0.06Down
Thoracicoabdominal ganglion21 ± 22 of 4 0.50None
Salivary gland22 ± 81 of 4 0.56None
Crop22 ± 20 of 4 0.60None
Midgut22 ± 50 of 4 0.60None
Tubule19 ± 11 of 4 0.50Down
Hindgut27 ± 14 of 4 0.70None
Heart3 ± 00 of 4 0.10Down
Fat body17 ± 30 of 4 0.44None
Ovary11 ± 20 of 4 0.30None
Testis15 ± 14 of 4 0.40None
Male accessory glands14 ± 50 of 4 0.40None
Virgin spermatheca15 ± 00 of 4 0.38None
Mated spermatheca12 ± 30 of 4 0.32None
Adult carcass24 ± 00 of 4 0.60None
Larval CNS21 ± 10 of 4 0.53None
Larval Salivary gland36 ± 60 of 4 0.91None
Larval midgut111 ± 273 of 4 2.82None
Larval tubule23 ± 13 of 4 0.60None
Larval hindgut977 ± 1764 of 424.70Up
Larval fat body16 ± 20 of 4 0.40None
Larval trachea3 ± 10 of 4 0.09Down
Larval carcass23 ± 30 of 4 0.59None
S2 cells (growing)26 ± 30 of 4 0.66None
Whole fly39 ± 102 of 4

Looking for CG13033-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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