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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13038-RA through 18771 annotations produced 1 hits



(CG13038):

Annotation Number : CG13038
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040795
Gbrowse : chr3L:16320416-16320668 (-) // 100.0 //
Probeset : 1631005_at
Accessions : protein= NP_652415;, nucleotide= NM_144158;
FlyMine data for FBgn0040795.
VDRC has 3 RNAi stocks for FBgn0040795 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 20 of 4 0.60None
Head9 ± 22 of 4 0.80None
Eye3 ± 00 of 4 0.32Down
Thoracicoabdominal ganglion8 ± 11 of 4 0.70None
Salivary gland25 ± 11 of 4 2.00Up
Crop12 ± 10 of 4 1.00None
Midgut21 ± 10 of 4 1.70Up
Tubule9 ± 00 of 4 0.80Down
Hindgut21 ± 23 of 4 1.70None
Heart6 ± 20 of 4 0.54None
Fat body17 ± 14 of 4 1.39None
Ovary5 ± 00 of 4 0.50Down
Testis44 ± 44 of 4 3.50Up
Male accessory glands19 ± 23 of 4 1.50None
Virgin spermatheca18 ± 14 of 4 1.47None
Mated spermatheca17 ± 33 of 4 1.37None
Adult carcass14 ± 52 of 4 1.10None
Larval CNS8 ± 21 of 4 0.66None
Larval Salivary gland9 ± 30 of 4 0.75None
Larval midgut20 ± 30 of 4 1.63None
Larval tubule7 ± 10 of 4 0.60None
Larval hindgut146 ± 64 of 411.75Up
Larval fat body11 ± 31 of 4 0.90None
Larval trachea45 ± 64 of 4 3.67Up
Larval carcass14 ± 20 of 4 1.18None
S2 cells (growing)5 ± 10 of 4 0.46Down
Whole fly12 ± 22 of 4

Looking for CG13038-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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