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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13042-RA through 18771 annotations produced 1 hits



(CG13042):

Annotation Number : CG13042
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036602
Gbrowse : chr3L:16301097-16301515 (-) // 100.0 //
Probeset : 1627290_at
Accessions : protein= NP_648870;, nucleotide= NM_140613;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036602.
BioGrid reports that CG13042 interacts with CG31038 .
VDRC has 1 RNAi stocks for FBgn0036602 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 11 of 4 0.60None
Head12 ± 22 of 4 0.70None
Eye10 ± 20 of 4 0.58None
Thoracicoabdominal ganglion32 ± 14 of 4 1.80Up
Salivary gland30 ± 140 of 4 1.68None
Crop23 ± 24 of 4 1.30None
Midgut27 ± 40 of 4 1.50None
Tubule20 ± 10 of 4 1.10None
Hindgut24 ± 22 of 4 1.40None
Heart14 ± 12 of 4 0.80None
Fat body27 ± 44 of 4 1.51None
Ovary9 ± 12 of 4 0.50None
Testis9 ± 01 of 4 0.50None
Male accessory glands17 ± 30 of 4 1.00None
Virgin spermatheca20 ± 21 of 4 1.12None
Mated spermatheca25 ± 32 of 4 1.36None
Adult carcass29 ± 12 of 4 1.60Up
Larval CNS11 ± 13 of 4 0.64None
Larval Salivary gland25 ± 30 of 4 1.41None
Larval midgut24 ± 10 of 4 1.36None
Larval tubule26 ± 40 of 4 1.40None
Larval hindgut25 ± 33 of 4 1.38None
Larval fat body23 ± 40 of 4 1.30None
Larval trachea43 ± 94 of 4 2.36Up
Larval carcass21 ± 34 of 4 1.16None
S2 cells (growing)18 ± 13 of 4 1.00None
Whole fly18 ± 32 of 4

Looking for CG13042-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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