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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13044-RA through 18771 annotations produced 1 hits



(CG13044):

Annotation Number : CG13044
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036599
Gbrowse : chr3L:16295680-16296213 (-) // 100.0 //
Probeset : 1640181_at
Accessions : protein= NP_648867;, nucleotide= NM_140610;
FlyMine data for FBgn0036599.
BioGrid reports that CG13044 interacts with CG14224 CG3891 CG4491 CG7056 CG7338 .
VDRC has 2 RNAi stocks for FBgn0036599 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 32 of 4 0.60None
Head15 ± 50 of 4 0.40None
Eye136 ± 444 of 4 3.84None
Thoracicoabdominal ganglion34 ± 40 of 4 1.00None
Salivary gland243 ± 262 of 4 6.86Up
Crop53 ± 51 of 4 1.50None
Midgut64 ± 100 of 4 1.80None
Tubule8 ± 20 of 4 0.20Down
Hindgut61 ± 60 of 4 1.70Up
Heart8 ± 10 of 4 0.23Down
Fat body14 ± 50 of 4 0.42None
Ovary26 ± 50 of 4 0.70None
Testis116 ± 24 of 4 3.30Up
Male accessory glands13 ± 00 of 4 0.40None
Virgin spermatheca7 ± 10 of 4 0.22Down
Mated spermatheca8 ± 10 of 4 0.24Down
Adult carcass66 ± 111 of 4 1.90None
Larval CNS129 ± 264 of 4 3.66Up
Larval Salivary gland212 ± 74 of 4 5.99Up
Larval midgut138 ± 230 of 4 3.90Up
Larval tubule17 ± 40 of 4 0.50None
Larval hindgut107 ± 73 of 4 3.03Up
Larval fat body17 ± 30 of 4 0.50None
Larval trachea4755 ± 3844 of 4134.23Up
Larval carcass289 ± 244 of 4 8.17Up
S2 cells (growing)58 ± 22 of 4 1.65Up
Whole fly35 ± 70 of 4

Looking for CG13044-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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