FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG13047-RA through 18771 annotations produced 1 hits

(CG13047):

Annotation Number : CG13047
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036594
Gbrowse : chr3L:16277864-16279242 (-) // 100.0 //
Probeset : 1629238_at
Accessions : protein= NP_648862;, nucleotide= NM_140605;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036594.
BioGrid reports that CG13047 interacts with CG5422 CG1378 CG14410 CG15884 CG31550 CG4164 CG4491 CG6240 CG7021 Dmel CG34354 .
VDRC has 2 RNAi stocks for FBgn0036594 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 2	0 of 4	0.40	Down
Head	4 ± 1	0 of 4	0.50	None
Eye	5 ± 1	0 of 4	0.60	None
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.40	None
Salivary gland	8 ± 4	0 of 4	0.96	None
Crop	7 ± 1	0 of 4	0.90	None
Midgut	11 ± 2	0 of 4	1.30	None
Tubule	11 ± 1	0 of 4	1.30	None
Hindgut	6 ± 1	0 of 4	0.70	None
Heart	1 ± 0	0 of 4	0.21	Down
Fat body	6 ± 3	0 of 4	0.74	None
Ovary	4 ± 1	0 of 4	0.50	None
Testis	6 ± 1	0 of 4	0.70	None
Male accessory glands	3 ± 0	0 of 4	0.40	None
Virgin spermatheca	3 ± 2	0 of 4	0.37	None
Mated spermatheca	1 ± 0	0 of 4	0.20	Down
Adult carcass	12 ± 5	0 of 4	1.50	None
Larval CNS	3 ± 2	0 of 4	0.43	None
Larval Salivary gland	3 ± 0	0 of 4	0.37	None
Larval midgut	6 ± 1	0 of 4	0.79	None
Larval tubule	7 ± 2	0 of 4	0.90	None
Larval hindgut	5 ± 1	0 of 4	0.64	None
Larval fat body	6 ± 2	0 of 4	0.70	None
Larval trachea	714 ± 149	4 of 4	82.59	Up
Larval carcass	12 ± 2	0 of 4	1.43	None
S2 cells (growing)	4 ± 1	0 of 4	0.57	None
Whole fly	8 ± 1	0 of 4

Looking for CG13047-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720