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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG13047-RA through 18771 annotations produced 1 hits


Annotation Number : CG13047
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036594
Gbrowse : chr3L:16277864-16279242 (-) // 100.0 //
Probeset : 1629238_at
Accessions : protein= NP_648862;, nucleotide= NM_140605;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036594.
BioGrid reports that CG13047 interacts with CG5422 CG1378 CG14410 CG15884 CG31550 CG4164 CG4491 CG6240 CG7021 Dmel CG34354 .
VDRC has 2 RNAi stocks for FBgn0036594 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 20 of 4 0.40Down
Head4 10 of 4 0.50None
Eye5 10 of 4 0.60None
Thoracicoabdominal ganglion3 10 of 4 0.40None
Salivary gland8 40 of 4 0.96None
Crop7 10 of 4 0.90None
Midgut11 20 of 4 1.30None
Tubule11 10 of 4 1.30None
Hindgut6 10 of 4 0.70None
Heart1 00 of 4 0.21Down
Fat body6 30 of 4 0.74None
Ovary4 10 of 4 0.50None
Testis6 10 of 4 0.70None
Male accessory glands3 00 of 4 0.40None
Virgin spermatheca3 20 of 4 0.37None
Mated spermatheca1 00 of 4 0.20Down
Adult carcass12 50 of 4 1.50None
Larval CNS3 20 of 4 0.43None
Larval Salivary gland3 00 of 4 0.37None
Larval midgut6 10 of 4 0.79None
Larval tubule7 20 of 4 0.90None
Larval hindgut5 10 of 4 0.64None
Larval fat body6 20 of 4 0.70None
Larval trachea714 1494 of 482.59Up
Larval carcass12 20 of 4 1.43None
S2 cells (growing)4 10 of 4 0.57None
Whole fly8 10 of 4

Looking for CG13047-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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