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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13063-RA through 18771 annotations produced 1 hits



(CG13063):

Annotation Number : CG13063
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036601
Gbrowse : chr3L:16299746-16300198 (+) // 100.0 //
Probeset : 1640553_at
Accessions : protein= NP_648869;, nucleotide= NM_140612;
FlyMine data for FBgn0036601.
BioGrid reports that CG13063 interacts with CG13840 CG14224 .
VDRC has 3 RNAi stocks for FBgn0036601 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 50 of 4 0.50None
Head22 ± 20 of 4 0.60None
Eye25 ± 111 of 4 0.66None
Thoracicoabdominal ganglion26 ± 60 of 4 0.70None
Salivary gland75 ± 111 of 4 1.94None
Crop17 ± 60 of 4 0.40None
Midgut55 ± 30 of 4 1.40None
Tubule22 ± 30 of 4 0.60Down
Hindgut28 ± 70 of 4 0.70None
Heart5 ± 10 of 4 0.13None
Fat body29 ± 60 of 4 0.76None
Ovary21 ± 20 of 4 0.60None
Testis14 ± 10 of 4 0.40None
Male accessory glands33 ± 80 of 4 0.90None
Virgin spermatheca30 ± 20 of 4 0.79None
Mated spermatheca32 ± 80 of 4 0.83None
Adult carcass36 ± 80 of 4 0.90None
Larval CNS7 ± 60 of 4 0.20None
Larval Salivary gland45 ± 80 of 4 1.16None
Larval midgut58 ± 30 of 4 1.49None
Larval tubule22 ± 90 of 4 0.60None
Larval hindgut25 ± 50 of 4 0.65None
Larval fat body28 ± 30 of 4 0.70None
Larval trachea1857 ± 4674 of 447.66Up
Larval carcass65 ± 120 of 4 1.69None
S2 cells (growing)18 ± 40 of 4 0.47None
Whole fly39 ± 120 of 4

Looking for CG13063-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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