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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13065-RA through 18771 annotations produced 1 hits



(CG13065):

Annotation Number : CG13065
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036590
Gbrowse : chr3L:16270532-16271283 (+) // 100.0 //
Probeset : 1636118_at
Accessions : protein= NP_648858;, nucleotide= NM_140601;
FlyMine data for FBgn0036590.
BDGP gene expression has embryonic in situ data for CG13065: 4 pix of staining in 1 body parts.
BioGrid reports that CG13065 interacts with CG8981 Dmel CG34354 .
VDRC has 2 RNAi stocks for FBgn0036590 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.40Down
Head9 ± 03 of 4 0.90None
Eye6 ± 11 of 4 0.57None
Thoracicoabdominal ganglion5 ± 10 of 4 0.50None
Salivary gland21 ± 22 of 4 2.02Up
Crop13 ± 22 of 4 1.20None
Midgut19 ± 30 of 4 1.80None
Tubule6 ± 00 of 4 0.60Down
Hindgut8 ± 01 of 4 0.80None
Heart6 ± 02 of 4 0.65Down
Fat body17 ± 54 of 4 1.61None
Ovary9 ± 01 of 4 0.90None
Testis4 ± 10 of 4 0.40Down
Male accessory glands12 ± 40 of 4 1.20None
Virgin spermatheca15 ± 14 of 4 1.44Up
Mated spermatheca16 ± 14 of 4 1.60Up
Adult carcass26 ± 34 of 4 2.50Up
Larval CNS7 ± 31 of 4 0.73None
Larval Salivary gland12 ± 10 of 4 1.13None
Larval midgut33 ± 41 of 4 3.15Up
Larval tubule15 ± 13 of 4 1.50Up
Larval hindgut9 ± 12 of 4 0.90None
Larval fat body11 ± 11 of 4 1.10None
Larval trachea6 ± 42 of 4 0.64None
Larval carcass12 ± 14 of 4 1.19None
S2 cells (growing)8 ± 11 of 4 0.77None
Whole fly10 ± 04 of 4

Looking for CG13065-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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