Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13067-RA through 18771 annotations produced 1 hits



(CG13067):

Annotation Number : CG13067
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036589
Gbrowse : chr3L:16264408-16265019 (+) // 100.0 //
Probeset : 1628261_at
Accessions : protein= NP_648857;, nucleotide= NM_140600;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036589.
BioGrid reports that CG13067 interacts with CG15865 CG13090 CG14119 CG14145 CG15109 CG31550 CG32264 CG6240 CG6576 CG7763 CG9465 CG9986 .
VDRC has 3 RNAi stocks for FBgn0036589 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain124 ± 24 of 4 1.00None
Head205 ± 94 of 4 1.70Up
Eye420 ± 1444 of 4 3.55None
Thoracicoabdominal ganglion111 ± 74 of 4 0.90None
Salivary gland159 ± 144 of 4 1.35None
Crop137 ± 84 of 4 1.20None
Midgut334 ± 84 of 4 2.80Up
Tubule239 ± 424 of 4 2.00Up
Hindgut353 ± 344 of 4 3.00Up
Heart383 ± 444 of 4 3.24Up
Fat body435 ± 774 of 4 3.67Up
Ovary41 ± 34 of 4 0.30Down
Testis22 ± 14 of 4 0.20Down
Male accessory glands78 ± 54 of 4 0.70Down
Virgin spermatheca164 ± 94 of 4 1.39Up
Mated spermatheca302 ± 154 of 4 2.56Up
Adult carcass314 ± 174 of 4 2.70Up
Larval CNS417 ± 1654 of 4 3.52Up
Larval Salivary gland269 ± 344 of 4 2.27Up
Larval midgut893 ± 174 of 4 7.54Up
Larval tubule37 ± 54 of 4 0.30Down
Larval hindgut766 ± 1024 of 4 6.47Up
Larval fat body19 ± 12 of 4 0.20Down
Larval trachea7239 ± 3754 of 461.09Up
Larval carcass859 ± 1154 of 4 7.25Up
S2 cells (growing)8 ± 10 of 4 0.07Down
Whole fly118 ± 114 of 4

Looking for CG13067-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime