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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG13068-RA through 18771 annotations produced 1 hits


Annotation Number : CG13068
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036588
Gbrowse : chr3L:16262534-16262934 (+) // 100.0 //
Probeset : 1623452_at
Accessions : protein= NP_648856;, nucleotide= NM_140599;
FlyMine data for FBgn0036588.
BioGrid reports that CG13068 interacts with CG6240 .
VDRC has 2 RNAi stocks for FBgn0036588 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 44 of 4 0.60None
Head67 54 of 4 0.80None
Eye30 44 of 4 0.37Down
Thoracicoabdominal ganglion79 24 of 4 1.00None
Salivary gland98 134 of 4 1.18None
Crop66 24 of 4 0.80None
Midgut196 64 of 4 2.40Up
Tubule56 44 of 4 0.70Down
Hindgut105 74 of 4 1.30None
Heart36 14 of 4 0.43Down
Fat body91 204 of 4 1.09None
Ovary73 14 of 4 0.90None
Testis45 34 of 4 0.50Down
Male accessory glands96 74 of 4 1.20None
Virgin spermatheca66 74 of 4 0.80None
Mated spermatheca89 44 of 4 1.07None
Adult carcass123 144 of 4 1.50None
Larval CNS56 54 of 4 0.67Down
Larval Salivary gland93 74 of 4 1.12None
Larval midgut272 124 of 4 3.26Up
Larval tubule58 33 of 4 0.70None
Larval hindgut70 44 of 4 0.84None
Larval fat body75 84 of 4 0.90None
Larval trachea819 1934 of 4 9.81Up
Larval carcass170 184 of 4 2.05Up
S2 cells (growing)71 34 of 4 0.86None
Whole fly83 84 of 4

Looking for CG13068-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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