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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13069-RA through 18771 annotations produced 1 hits



(CG13069):

Annotation Number : CG13069
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040798
Gbrowse : chr3L:16258529-16258823 (+) // 100.0 //
Probeset : 1639851_at
Accessions : protein= NP_652418;, nucleotide= NM_144161;
FlyMine data for FBgn0040798.
VDRC has 1 RNAi stocks for FBgn0040798 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 22 of 4 0.50None
Head23 31 of 4 0.60None
Eye21 31 of 4 0.51None
Thoracicoabdominal ganglion33 30 of 4 0.80None
Salivary gland61 91 of 4 1.46None
Crop23 50 of 4 0.50None
Midgut43 110 of 4 1.00None
Tubule14 10 of 4 0.30Down
Hindgut32 10 of 4 0.80None
Heart13 20 of 4 0.31Down
Fat body42 93 of 4 1.02None
Ovary14 20 of 4 0.30Down
Testis12 10 of 4 0.30Down
Male accessory glands29 70 of 4 0.70None
Virgin spermatheca44 73 of 4 1.07None
Mated spermatheca42 83 of 4 1.01None
Adult carcass75 174 of 4 1.80None
Larval CNS27 60 of 4 0.64None
Larval Salivary gland28 40 of 4 0.67None
Larval midgut121 104 of 4 2.88Up
Larval tubule23 20 of 4 0.60None
Larval hindgut29 10 of 4 0.69None
Larval fat body35 40 of 4 0.80None
Larval trachea863 1684 of 420.57Up
Larval carcass44 23 of 4 1.06None
S2 cells (growing)35 40 of 4 0.84None
Whole fly42 73 of 4

Looking for CG13069-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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