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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13070-RA through 18771 annotations produced 1 hits



(CG13070):

Annotation Number : CG13070
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036586
Gbrowse : chr3L:16256787-16257171 (+) // 100.0 //
Probeset : 1627648_at
Accessions : protein= NP_648854;, nucleotide= NM_140597;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036586.
BioGrid reports that CG13070 interacts with CG7290 .
VDRC has 3 RNAi stocks for FBgn0036586 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.90None
Head2 ± 00 of 4 0.60None
Eye7 ± 10 of 4 1.60None
Thoracicoabdominal ganglion4 ± 10 of 4 0.90None
Salivary gland6 ± 20 of 4 1.33None
Crop6 ± 10 of 4 1.30None
Midgut4 ± 20 of 4 1.00None
Tubule3 ± 00 of 4 0.80None
Hindgut4 ± 10 of 4 0.90None
Heart3 ± 00 of 4 0.75None
Fat body6 ± 20 of 4 1.35None
Ovary1 ± 00 of 4 0.30None
Testis8 ± 12 of 4 1.80None
Male accessory glands4 ± 10 of 4 1.00None
Virgin spermatheca5 ± 10 of 4 1.15None
Mated spermatheca5 ± 00 of 4 1.10None
Adult carcass6 ± 20 of 4 1.40None
Larval CNS3 ± 21 of 4 0.73None
Larval Salivary gland7 ± 10 of 4 1.62None
Larval midgut6 ± 11 of 4 1.42None
Larval tubule4 ± 11 of 4 0.90None
Larval hindgut4 ± 10 of 4 0.94None
Larval fat body6 ± 20 of 4 1.40None
Larval trachea5 ± 11 of 4 1.18None
Larval carcass3 ± 10 of 4 0.83None
S2 cells (growing)5 ± 01 of 4 1.16None
Whole fly4 ± 10 of 4

Looking for CG13070-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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