FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG13073-RB through 18771 annotations produced 2 hits

(CG13073):

Annotation Number : CG13073
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036577
Gbrowse : chr3L:16206150-16207206 (-) // 100.0 //
Probeset : 1627304_at
Accessions : protein= NP_648845; /// NP_730118;, nucleotide= NM_140588; /// NM_168654;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036577.
BioGrid reports that CG13073 interacts with CG3647 .
VDRC has 2 RNAi stocks for FBgn0036577 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.50	None
Head	1 ± 1	0 of 4	0.70	None
Eye	5 ± 2	0 of 4	2.33	None
Thoracicoabdominal ganglion	2 ± 0	0 of 4	1.00	None
Salivary gland	7 ± 2	0 of 4	2.98	None
Crop	1 ± 0	0 of 4	0.70	None
Midgut	1 ± 0	0 of 4	0.50	None
Tubule	2 ± 0	0 of 4	1.10	None
Hindgut	5 ± 1	0 of 4	2.20	None
Heart	1 ± 0	0 of 4	0.49	None
Fat body	2 ± 2	0 of 4	1.07	None
Ovary	0 ± 0	0 of 4	0.30	None
Testis	1 ± 0	0 of 4	0.60	None
Male accessory glands	4 ± 1	0 of 4	1.90	None
Virgin spermatheca	1 ± 0	0 of 4	0.76	None
Mated spermatheca	1 ± 1	0 of 4	0.72	None
Adult carcass	1 ± 0	0 of 4	0.80	None
Larval CNS	1 ± 1	0 of 4	0.69	None
Larval Salivary gland	3 ± 1	0 of 4	1.55	None
Larval midgut	2 ± 1	0 of 4	1.02	None
Larval tubule	2 ± 1	0 of 4	0.90	None
Larval hindgut	1 ± 0	0 of 4	0.41	None
Larval fat body	4 ± 1	0 of 4	1.90	None
Larval trachea	2 ± 1	0 of 4	0.84	None
Larval carcass	0 ± 0	0 of 4	0.36	None
S2 cells (growing)	1 ± 0	0 of 4	0.68	None
Whole fly	2 ± 0	0 of 4

(CG13073):

Annotation Number : CG13073
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036577
Gbrowse : chr3L:16206150-16207200 (-) // 100.0 //
Probeset : 1632880_a_at
Accessions : protein= NP_648845; /// NP_730118;, nucleotide= NM_140588; /// NM_168654;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036577.
BioGrid reports that CG13073 interacts with CG3647 .
VDRC has 2 RNAi stocks for FBgn0036577 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 1	0 of 4	0.40	None
Head	3 ± 0	0 of 4	0.80	None
Eye	4 ± 1	0 of 4	0.88	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.60	None
Salivary gland	13 ± 4	1 of 4	2.98	None
Crop	5 ± 1	0 of 4	1.10	None
Midgut	9 ± 1	0 of 4	2.10	Up
Tubule	5 ± 1	0 of 4	1.10	None
Hindgut	12 ± 2	0 of 4	2.70	Up
Heart	4 ± 0	0 of 4	0.89	None
Fat body	6 ± 6	0 of 4	1.46	None
Ovary	1 ± 0	0 of 4	0.30	None
Testis	0 ± 0	0 of 4	0.10	None
Male accessory glands	11 ± 3	0 of 4	2.40	None
Virgin spermatheca	5 ± 1	0 of 4	1.17	None
Mated spermatheca	5 ± 1	0 of 4	1.14	None
Adult carcass	7 ± 2	0 of 4	1.60	None
Larval CNS	2 ± 2	0 of 4	0.55	None
Larval Salivary gland	5 ± 1	0 of 4	1.12	None
Larval midgut	5 ± 2	0 of 4	1.21	None
Larval tubule	2 ± 0	0 of 4	0.50	None
Larval hindgut	6 ± 1	0 of 4	1.41	None
Larval fat body	3 ± 1	0 of 4	0.70	None
Larval trachea	4 ± 2	0 of 4	1.05	None
Larval carcass	3 ± 0	0 of 4	0.85	None
S2 cells (growing)	0 ± 0	0 of 4	0.18	None
Whole fly	4 ± 1	0 of 4

Looking for CG13073-RB. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720