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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13076-RA through 18771 annotations produced 1 hits



wingful (Notum):

Annotation Number : CG13076
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0044028
Gbrowse : chr3L:16022487-16024441 (+) // 100.0 //
Probeset : 1637977_a_at
Accessions : protein= NP_730095; /// NP_730096;, nucleotide= NM_168642; /// NM_168643;
Pathway : 0005615 // extracellular space // inferred from direct assay
Interpro : 0019213 // deacetylase activity // inferred from direct assay
FlyMine data for FBgn0044028.
TRiP has 1 RNAi stocks for FBgn0044028 available for purchase.
VDRC has 3 RNAi stocks for FBgn0044028 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.60None
Head3 ± 00 of 4 0.70None
Eye5 ± 20 of 4 1.04None
Thoracicoabdominal ganglion3 ± 10 of 4 0.70None
Salivary gland5 ± 10 of 4 1.04None
Crop3 ± 10 of 4 0.60None
Midgut1 ± 00 of 4 0.30None
Tubule1 ± 00 of 4 0.30Down
Hindgut4 ± 10 of 4 0.70None
Heart3 ± 10 of 4 0.66None
Fat body7 ± 50 of 4 1.44None
Ovary2 ± 00 of 4 0.50None
Testis3 ± 10 of 4 0.60None
Male accessory glands2 ± 00 of 4 0.50None
Virgin spermatheca6 ± 00 of 4 1.11None
Mated spermatheca5 ± 41 of 4 1.02None
Adult carcass4 ± 10 of 4 0.70None
Larval CNS4 ± 20 of 4 0.79None
Larval Salivary gland2 ± 00 of 4 0.49None
Larval midgut2 ± 00 of 4 0.48None
Larval tubule3 ± 00 of 4 0.60None
Larval hindgut9 ± 20 of 4 1.72None
Larval fat body2 ± 00 of 4 0.40None
Larval trachea10 ± 20 of 4 2.02None
Larval carcass13 ± 10 of 4 2.53Up
S2 cells (growing)17 ± 10 of 4 3.31Up
Whole fly5 ± 10 of 4

Looking for CG13076-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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