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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1309-RA through 18771 annotations produced 1 hits



(CG1309):

Annotation Number : CG1309
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035519
Gbrowse : chr3L:4259418-4261649 (+) // 100.0 //
Probeset : 1630881_at
Accessions : protein= NP_647880;, nucleotide= NM_139623;
FlyMine data for FBgn0035519.
BDGP gene expression has embryonic in situ data for CG1309: 11 pix of staining in 1 body parts.
BioGrid reports that CG1309 interacts with CG1746 .
VDRC has 3 RNAi stocks for FBgn0035519 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain249 54 of 4 0.90None
Head348 44 of 4 1.20Up
Eye710 314 of 4 2.51Up
Thoracicoabdominal ganglion317 134 of 4 1.10None
Salivary gland372 124 of 4 1.31Up
Crop622 104 of 4 2.20Up
Midgut333 84 of 4 1.20Up
Tubule427 134 of 4 1.50Up
Hindgut450 124 of 4 1.60Up
Heart708 314 of 4 2.50Up
Fat body693 814 of 4 2.45Up
Ovary277 94 of 4 1.00None
Testis548 174 of 4 1.90Up
Male accessory glands352 154 of 4 1.20Up
Virgin spermatheca224 74 of 4 0.79Down
Mated spermatheca221 34 of 4 0.78Down
Adult carcass563 184 of 4 2.00Up
Larval CNS217 64 of 4 0.77Down
Larval Salivary gland420 174 of 4 1.48Up
Larval midgut309 24 of 4 1.09None
Larval tubule452 24 of 4 1.60Up
Larval hindgut270 84 of 4 0.96None
Larval fat body351 114 of 4 1.20Up
Larval trachea225 164 of 4 0.80Down
Larval carcass334 124 of 4 1.18Up
S2 cells (growing)327 74 of 4 1.16Up
Whole fly283 94 of 4

Looking for CG1309-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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