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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13091-RA through 18771 annotations produced 1 hits



(CG13091):

Annotation Number : CG13091
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032055
Gbrowse : chr2L:8519689-8521733 (+) // 100.0 //
Probeset : 1630532_at
Accessions : protein= NP_609241;, nucleotide= NM_135397;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0032055.
BDGP gene expression has embryonic in situ data for CG13091: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0032055 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion31 ± 261 of 4 0.10Down
Salivary gland16 ± 30 of 4 0.03Down
Crop10 ± 81 of 4 0.00Down
Midgut8 ± 00 of 4 0.00Down
Tubule17 ± 52 of 4 0.00Down
Hindgut4 ± 00 of 4 0.00Down
Heart4500 ± 3174 of 4 9.23Up
Fat body3530 ± 3184 of 4 7.24Up
Ovary2 ± 00 of 4 0.00Down
Testis10 ± 04 of 4 0.00Down
Male accessory glands6 ± 10 of 4 0.00Down
Virgin spermatheca5 ± 00 of 4 0.01Down
Mated spermatheca7 ± 00 of 4 0.02Down
Adult carcass3337 ± 2004 of 4 6.80Up
Larval CNS2 ± 10 of 4 0.01Down
Larval Salivary gland2 ± 10 of 4 0.01Down
Larval midgut9 ± 10 of 4 0.02Down
Larval tubule8 ± 11 of 4 0.00Down
Larval hindgut4 ± 00 of 4 0.01Down
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea2 ± 10 of 4 0.00Down
Larval carcass3 ± 10 of 4 0.01Down
S2 cells (growing)2 ± 00 of 4 0.01Down
Whole fly487 ± 354 of 4

Looking for CG13091-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime