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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13097-RA through 18771 annotations produced 1 hits



(CG13097):

Annotation Number : CG13097
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032051
Gbrowse : chr2L:8512168-8514864 (-) // 100.0 //
Probeset : 1626818_at
Accessions : protein= NP_609237;, nucleotide= NM_135393;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from elec
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032051.
BDGP gene expression has embryonic in situ data for CG13097: 4 pix of staining in 1 body parts.
BioGrid reports that CG13097 interacts with CG4866 CG16717 CG32772 CG5709 CG8997 .
VDRC has 2 RNAi stocks for FBgn0032051 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 14 of 4 0.30Down
Head42 34 of 4 0.30Down
Eye41 24 of 4 0.30Down
Thoracicoabdominal ganglion48 24 of 4 0.40Down
Salivary gland81 94 of 4 0.60Down
Crop62 24 of 4 0.50Down
Midgut64 04 of 4 0.50Down
Tubule39 64 of 4 0.30Down
Hindgut51 24 of 4 0.40Down
Heart39 34 of 4 0.29Down
Fat body66 54 of 4 0.49Down
Ovary300 54 of 4 2.20Up
Testis31 14 of 4 0.20Down
Male accessory glands115 64 of 4 0.90None
Virgin spermatheca62 24 of 4 0.46Down
Mated spermatheca86 14 of 4 0.64Down
Adult carcass59 34 of 4 0.40Down
Larval CNS161 74 of 4 1.19None
Larval Salivary gland141 134 of 4 1.04None
Larval midgut51 50 of 4 0.37Down
Larval tubule23 24 of 4 0.20Down
Larval hindgut67 104 of 4 0.50Down
Larval fat body24 24 of 4 0.20Down
Larval trachea129 214 of 4 0.95None
Larval carcass105 194 of 4 0.78None
S2 cells (growing)135 44 of 4 1.00None
Whole fly135 104 of 4

Looking for CG13097-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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