FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG1311-RA through 18771 annotations produced 1 hits

(CG1311):

Annotation Number : CG1311
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035523
Gbrowse : chr3L:4277963-4281618 (+) // 100.0 //
Probeset : 1634087_at
Accessions : protein= NP_647884;, nucleotide= NM_139627;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0035523.
VDRC has 4 RNAi stocks for FBgn0035523 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	120 ± 4	4 of 4	0.80	Down
Head	146 ± 4	4 of 4	1.00	None
Eye	139 ± 9	4 of 4	0.92	None
Thoracicoabdominal ganglion	150 ± 6	4 of 4	1.00	None
Salivary gland	240 ± 19	4 of 4	1.59	Up
Crop	224 ± 14	4 of 4	1.50	Up
Midgut	113 ± 2	4 of 4	0.80	Down
Tubule	234 ± 2	4 of 4	1.50	Up
Hindgut	368 ± 7	4 of 4	2.40	Up
Heart	148 ± 10	4 of 4	0.98	None
Fat body	110 ± 17	4 of 4	0.73	Down
Ovary	218 ± 8	4 of 4	1.40	Up
Testis	57 ± 2	4 of 4	0.40	Down
Male accessory glands	180 ± 14	4 of 4	1.20	None
Virgin spermatheca	73 ± 6	4 of 4	0.49	Down
Mated spermatheca	103 ± 12	4 of 4	0.69	Down
Adult carcass	155 ± 5	4 of 4	1.00	None
Larval CNS	388 ± 19	4 of 4	2.57	Up
Larval Salivary gland	218 ± 5	4 of 4	1.44	Up
Larval midgut	155 ± 10	4 of 4	1.02	None
Larval tubule	347 ± 13	4 of 4	2.30	Up
Larval hindgut	345 ± 9	4 of 4	2.28	Up
Larval fat body	65 ± 4	2 of 4	0.40	Down
Larval trachea	315 ± 35	4 of 4	2.08	Up
Larval carcass	223 ± 6	4 of 4	1.48	Up
S2 cells (growing)	509 ± 3	4 of 4	3.37	Up
Whole fly	151 ± 5	4 of 4

Looking for CG1311-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720