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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13117-RA through 18771 annotations produced 1 hits



(CG13117):

Annotation Number : CG13117
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032140
Gbrowse : chr2L:9736644-9737333 (+) // 100.0 //
Probeset : 1634978_at
Accessions : protein= NP_609307;, nucleotide= NM_135463;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032140.
VDRC has 3 RNAi stocks for FBgn0032140 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 ± 34 of 4 0.30Down
Head352 ± 254 of 4 3.50Up
Eye926 ± 694 of 4 9.07Up
Thoracicoabdominal ganglion18 ± 11 of 4 0.20Down
Salivary gland47 ± 62 of 4 0.47Down
Crop97 ± 44 of 4 1.00None
Midgut196 ± 134 of 4 1.90Up
Tubule155 ± 284 of 4 1.50None
Hindgut251 ± 204 of 4 2.50Up
Heart166 ± 324 of 4 1.63None
Fat body39 ± 94 of 4 0.39Down
Ovary76 ± 74 of 4 0.80None
Testis47 ± 53 of 4 0.50Down
Male accessory glands17 ± 30 of 4 0.20Down
Virgin spermatheca31 ± 24 of 4 0.31Down
Mated spermatheca48 ± 94 of 4 0.47Down
Adult carcass77 ± 34 of 4 0.80None
Larval CNS70 ± 144 of 4 0.69None
Larval Salivary gland32 ± 04 of 4 0.32Down
Larval midgut62 ± 104 of 4 0.61None
Larval tubule302 ± 164 of 4 3.00Up
Larval hindgut281 ± 74 of 4 2.76Up
Larval fat body17 ± 22 of 4 0.20Down
Larval trachea1350 ± 804 of 413.23Up
Larval carcass162 ± 74 of 4 1.59Up
S2 cells (growing)1320 ± 384 of 412.93Up
Whole fly102 ± 134 of 4

Looking for CG13117-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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