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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13124-RA through 18771 annotations produced 1 hits



(CG13124):

Annotation Number : CG13124
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032156
Gbrowse : chr2L:9903385-9908608 (-) // 100.0 //
Probeset : 1640222_s_at
Accessions : protein= NP_001137811; /// NP_001162923; /// NP_001162924; /// NP_001162925; /// NP_001162926; /// NP_001162927; /// NP_001162928; /// NP_609319; /// NP_788017;, nucleotide= NM_001144339; /// NM_001169452; /// NM_001169453; /// NM_001169454; /// NM_001169455; /// NM_001169456; /// NM_001169457; /// NM_135475; /// NM_176003;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic ann
FlyMine data for FBgn0032156.
BDGP gene expression has embryonic in situ data for CG13124: 13 pix of staining in 3 body parts.
BioGrid reports that CG13124 interacts with CG2950 CG33017 CG13458 CG2199 CG3342 CG4394 CG4865 CG7360 CG7809 CG7954 .
VDRC has 3 RNAi stocks for FBgn0032156 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain524 ± 94 of 4 0.70Down
Head1094 ± 304 of 4 1.50Up
Eye509 ± 284 of 4 0.72Down
Thoracicoabdominal ganglion912 ± 94 of 4 1.30Up
Salivary gland746 ± 294 of 4 1.06None
Crop3180 ± 1054 of 4 4.50Up
Midgut388 ± 54 of 4 0.50Down
Tubule703 ± 444 of 4 1.00None
Hindgut1839 ± 514 of 4 2.60Up
Heart1486 ± 684 of 4 2.10Up
Fat body230 ± 234 of 4 0.33Down
Ovary45 ± 24 of 4 0.10Down
Testis186 ± 74 of 4 0.30Down
Male accessory glands556 ± 184 of 4 0.80Down
Virgin spermatheca691 ± 244 of 4 0.98None
Mated spermatheca1114 ± 974 of 4 1.58Up
Adult carcass1878 ± 554 of 4 2.70Up
Larval CNS237 ± 174 of 4 0.34Down
Larval Salivary gland310 ± 84 of 4 0.44Down
Larval midgut630 ± 294 of 4 0.89None
Larval tubule268 ± 174 of 4 0.40Down
Larval hindgut1153 ± 494 of 4 1.63Up
Larval fat body49 ± 54 of 4 0.10Down
Larval trachea639 ± 1134 of 4 0.90None
Larval carcass1015 ± 574 of 4 1.44Up
S2 cells (growing)658 ± 204 of 4 0.93None
Whole fly707 ± 484 of 4

Looking for CG13124-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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