Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13131-RA through 18771 annotations produced 1 hits



(CG13131):

Annotation Number : CG13131
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032175
Gbrowse : chr2L:10013270-10017463 (-) // 100.0 //
Probeset : 1626139_at
Accessions : protein= NP_001137812; /// NP_609337;, nucleotide= NM_001144340; /// NM_135493;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032175.
BioGrid reports that CG13131 interacts with CG1911 CG31543 CG9360 CG15141 CG1836 CG32346 CG6570 CG6904 .
VDRC has 2 RNAi stocks for FBgn0032175 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 01 of 4 0.20Down
Head3 10 of 4 0.20Down
Eye2 10 of 4 0.13Down
Thoracicoabdominal ganglion6 21 of 4 0.40Down
Salivary gland12 41 of 4 0.73None
Crop8 21 of 4 0.50Down
Midgut5 10 of 4 0.30Down
Tubule7 10 of 4 0.40Down
Hindgut8 11 of 4 0.50Down
Heart2 00 of 4 0.17Down
Fat body18 24 of 4 1.03None
Ovary3 10 of 4 0.20Down
Testis145 94 of 4 8.20Up
Male accessory glands12 31 of 4 0.70None
Virgin spermatheca6 11 of 4 0.39Down
Mated spermatheca10 12 of 4 0.59Down
Adult carcass10 30 of 4 0.60None
Larval CNS6 33 of 4 0.36Down
Larval Salivary gland7 22 of 4 0.40Down
Larval midgut5 11 of 4 0.30Down
Larval tubule7 01 of 4 0.40Down
Larval hindgut5 11 of 4 0.30Down
Larval fat body47 174 of 4 2.70None
Larval trachea5 10 of 4 0.29Down
Larval carcass5 20 of 4 0.32Down
S2 cells (growing)4 10 of 4 0.28Down
Whole fly17 14 of 4

Looking for CG13131-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime