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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13137-RA through 18771 annotations produced 1 hits



(CG13137):

Annotation Number : CG13137
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032188
Gbrowse : chr2L:10173042-10174056 (+) // 100.0 //
Probeset : 1639003_at
Accessions : protein= NP_609350;, nucleotide= NM_135506;
FlyMine data for FBgn0032188.
VDRC has 3 RNAi stocks for FBgn0032188 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 1.10None
Head0 ± 00 of 4 0.40Down
Eye1 ± 00 of 4 1.31None
Thoracicoabdominal ganglion0 ± 00 of 4 0.60None
Salivary gland1 ± 00 of 4 2.06None
Crop2 ± 20 of 4 3.40None
Midgut0 ± 00 of 4 0.70None
Tubule1 ± 00 of 4 1.30None
Hindgut0 ± 00 of 4 0.70None
Heart0 ± 00 of 4 1.22None
Fat body0 ± 00 of 4 1.16None
Ovary0 ± 00 of 4 0.50Down
Testis40 ± 04 of 450.10Up
Male accessory glands3 ± 20 of 4 3.90None
Virgin spermatheca0 ± 00 of 4 0.50Down
Mated spermatheca0 ± 00 of 4 1.06None
Adult carcass0 ± 00 of 4 0.80None
Larval CNS0 ± 00 of 4 0.50Down
Larval Salivary gland0 ± 00 of 4 0.84None
Larval midgut0 ± 00 of 4 0.56None
Larval tubule0 ± 00 of 4 0.60None
Larval hindgut0 ± 00 of 4 1.09None
Larval fat body12 ± 61 of 415.30None
Larval trachea1 ± 10 of 4 2.00None
Larval carcass0 ± 00 of 4 1.22None
S2 cells (growing)0 ± 00 of 4 0.31Down
Whole fly0 ± 00 of 4

Looking for CG13137-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime