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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13142-RA through 18771 annotations produced 1 hits



(CG13142):

Annotation Number : CG13142
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032251
Gbrowse : chr2L:10439528-10440626 (+) // 100.0 //
Probeset : 1634193_at
Accessions : protein= NP_001162938; /// NP_609405;, nucleotide= NM_001169467; /// NM_135561;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032251.
BioGrid reports that CG13142 interacts with CG7001 .
VDRC has 4 RNAi stocks for FBgn0032251 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 ± 24 of 4 0.60Down
Head35 ± 34 of 4 0.40Down
Eye31 ± 14 of 4 0.35Down
Thoracicoabdominal ganglion60 ± 44 of 4 0.70Down
Salivary gland43 ± 43 of 4 0.47Down
Crop39 ± 24 of 4 0.40Down
Midgut41 ± 34 of 4 0.40Down
Tubule36 ± 23 of 4 0.40Down
Hindgut40 ± 34 of 4 0.40Down
Heart29 ± 34 of 4 0.32Down
Fat body33 ± 24 of 4 0.37Down
Ovary205 ± 44 of 4 2.20Up
Testis95 ± 54 of 4 1.00None
Male accessory glands37 ± 54 of 4 0.40Down
Virgin spermatheca22 ± 24 of 4 0.24Down
Mated spermatheca20 ± 14 of 4 0.23Down
Adult carcass35 ± 24 of 4 0.40Down
Larval CNS50 ± 44 of 4 0.55Down
Larval Salivary gland19 ± 14 of 4 0.22Down
Larval midgut35 ± 42 of 4 0.38Down
Larval tubule32 ± 20 of 4 0.40Down
Larval hindgut38 ± 44 of 4 0.42Down
Larval fat body36 ± 64 of 4 0.40Down
Larval trachea46 ± 74 of 4 0.50Down
Larval carcass16 ± 42 of 4 0.18Down
S2 cells (growing)34 ± 34 of 4 0.38Down
Whole fly91 ± 44 of 4

Looking for CG13142-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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