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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1315-RA through 18771 annotations produced 1 hits



argininosuccinate synthase-like (CG1315):

Annotation Number : CG1315
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026565
Gbrowse : chr3R:2468131-2470122 (-) // 100.0 //
Probeset : 1641357_at
Accessions : protein= NP_649674;, nucleotide= NM_141417;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004055 // argininosuccinate synthase activity
FlyMine data for FBgn0026565.
Homophila reports that CG1315 is a close match (6e-128) to human gene ASS (NP_446464), a gene associated with Citrullinemia, 215700 (3).
BioGrid reports that CG1315 interacts with CG16728 .
VDRC has 3 RNAi stocks for FBgn0026565 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head92 ± 104 of 4 1.10None
Eye44 ± 64 of 4 0.53Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland15 ± 40 of 4 0.18Down
Crop4 ± 20 of 4 0.10Down
Midgut780 ± 374 of 4 9.30Up
Tubule1934 ± 1934 of 423.00Up
Hindgut142 ± 64 of 4 1.70Up
Heart140 ± 184 of 4 1.67Up
Fat body280 ± 384 of 4 3.34Up
Ovary2 ± 10 of 4 0.00Down
Testis8 ± 20 of 4 0.10Down
Male accessory glands2 ± 10 of 4 0.00Down
Virgin spermatheca307 ± 154 of 4 3.66Up
Mated spermatheca352 ± 324 of 4 4.20Up
Adult carcass151 ± 34 of 4 1.80Up
Larval CNS3 ± 20 of 4 0.04Down
Larval Salivary gland3 ± 10 of 4 0.04Down
Larval midgut301 ± 144 of 4 3.59Up
Larval tubule174 ± 204 of 4 2.10Up
Larval hindgut51 ± 54 of 4 0.62Down
Larval fat body10 ± 30 of 4 0.10Down
Larval trachea3 ± 30 of 4 0.04Down
Larval carcass7 ± 10 of 4 0.08Down
S2 cells (growing)5 ± 10 of 4 0.06Down
Whole fly84 ± 84 of 4

Looking for CG1315-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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