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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13157-RA through 18771 annotations produced 1 hits



(CG13157):

Annotation Number : CG13157
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033732
Gbrowse : chr2R:8303959-8305647 (+) // 100.0 //
Probeset : 1629425_at
Accessions : protein= NP_610778;, nucleotide= NM_136934;
FlyMine data for FBgn0033732.
BioGrid reports that CG13157 interacts with CG13630 CG4303 CG13214 CG15109 CG15126 CG2096 CG3151 CG4270 CG5099 CG6945 CG7104 CG7231 CG7264 .
VDRC has 2 RNAi stocks for FBgn0033732 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 1.10None
Head8 ± 11 of 4 1.70None
Eye3 ± 00 of 4 0.67None
Thoracicoabdominal ganglion9 ± 11 of 4 1.80None
Salivary gland8 ± 20 of 4 1.74None
Crop9 ± 21 of 4 1.80None
Midgut11 ± 11 of 4 2.40None
Tubule7 ± 10 of 4 1.50Up
Hindgut10 ± 32 of 4 2.10None
Heart3 ± 10 of 4 0.69None
Fat body8 ± 20 of 4 1.66None
Ovary3 ± 10 of 4 0.70None
Testis5 ± 00 of 4 1.10None
Male accessory glands3 ± 10 of 4 0.60None
Virgin spermatheca7 ± 20 of 4 1.42None
Mated spermatheca10 ± 22 of 4 2.19None
Adult carcass9 ± 20 of 4 2.00None
Larval CNS4 ± 30 of 4 0.90None
Larval Salivary gland7 ± 10 of 4 1.53None
Larval midgut10 ± 21 of 4 2.07None
Larval tubule9 ± 12 of 4 2.00None
Larval hindgut4 ± 10 of 4 0.81None
Larval fat body9 ± 31 of 4 1.80None
Larval trachea8 ± 40 of 4 1.65None
Larval carcass10 ± 20 of 4 2.10None
S2 cells (growing)3 ± 00 of 4 0.65None
Whole fly5 ± 21 of 4

Looking for CG13157-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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