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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG13159-RA through 18771 annotations produced 1 hits


Annotation Number : CG13159
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033721
Gbrowse : chr2R:8262793-8263196 (+) // 100.0 //
Probeset : 1639474_at
Accessions : protein= NP_610768;, nucleotide= NM_136924;
FlyMine data for FBgn0033721.
BDGP gene expression has embryonic in situ data for CG13159: 12 pix of staining in 3 body parts.
BioGrid reports that CG13159 interacts with CG31721 CG13245 CG13312 CG14039 CG1417 CG14641 CG14667 CG1502 CG15141 CG15170 CG1567 CG15861 CG16947 CG17377 CG17440 CG17666 CG17826 CG1921 CG31999 CG32036 CG33017 CG4786 CG4835 CG5380 CG5731 CG5933 CG6378 CG6864 CG6996 CG7109 CG7113 CG7123 CG7417 CG7570 CG7954 CG8316 CG9014 .
VDRC has 3 RNAi stocks for FBgn0033721 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 22 of 4 0.10Down
Head13 31 of 4 0.10Down
Eye9 20 of 4 0.08Down
Thoracicoabdominal ganglion8 12 of 4 0.10Down
Salivary gland42 91 of 4 0.35None
Crop51 103 of 4 0.40None
Midgut10 40 of 4 0.10Down
Tubule24 11 of 4 0.20Down
Hindgut39 133 of 4 0.30None
Heart8 10 of 4 0.07Down
Fat body21 121 of 4 0.17None
Ovary4 10 of 4 0.00Down
Testis7 10 of 4 0.10Down
Male accessory glands30 31 of 4 0.20None
Virgin spermatheca12 30 of 4 0.10Down
Mated spermatheca12 20 of 4 0.10Down
Adult carcass15 40 of 4 0.10Down
Larval CNS14 30 of 4 0.12Down
Larval Salivary gland44 70 of 4 0.37None
Larval midgut37 33 of 4 0.31None
Larval tubule15 31 of 4 0.10Down
Larval hindgut32 23 of 4 0.26None
Larval fat body14 40 of 4 0.10Down
Larval trachea8 30 of 4 0.07Down
Larval carcass20 32 of 4 0.17None
S2 cells (growing)14 00 of 4 0.12Down
Whole fly122 334 of 4

Looking for CG13159-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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