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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1316-RA through 18771 annotations produced 1 hits



(CG1316):

Annotation Number : CG1316
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035526
Gbrowse : chr3L:4283854-4285918 (+) // 100.0 //
Probeset : 1633022_at
Accessions : protein= NP_647887;, nucleotide= NM_139630;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0035526.
BDGP gene expression has embryonic in situ data for CG1316: 4 pix of staining in 1 body parts.
BioGrid reports that CG1316 interacts with CG15772 .
VDRC has 2 RNAi stocks for FBgn0035526 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain266 74 of 4 2.30Up
Head88 94 of 4 0.80None
Eye61 44 of 4 0.52Down
Thoracicoabdominal ganglion137 174 of 4 1.20None
Salivary gland148 54 of 4 1.27Up
Crop133 144 of 4 1.10None
Midgut92 34 of 4 0.80None
Tubule57 44 of 4 0.50Down
Hindgut93 34 of 4 0.80None
Heart46 14 of 4 0.40Down
Fat body61 144 of 4 0.53Down
Ovary147 14 of 4 1.30Up
Testis133 84 of 4 1.10None
Male accessory glands1918 1024 of 416.50Up
Virgin spermatheca31 24 of 4 0.27Down
Mated spermatheca31 24 of 4 0.27Down
Adult carcass99 34 of 4 0.90None
Larval CNS169 44 of 4 1.46Up
Larval Salivary gland115 234 of 4 0.99None
Larval midgut54 34 of 4 0.47Down
Larval tubule147 44 of 4 1.30Up
Larval hindgut67 24 of 4 0.58Down
Larval fat body139 94 of 4 1.20None
Larval trachea65 84 of 4 0.56Down
Larval carcass57 44 of 4 0.50Down
S2 cells (growing)277 124 of 4 2.39Up
Whole fly116 94 of 4

Looking for CG1316-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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