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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13164-RE through 18771 annotations produced 1 hits



Syntaxin Interacting Protein 2 (SIP2):

Annotation Number : CG13164
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0061197
Gbrowse : chr2R:8190041-8193774 (-) // 100.0 //
Probeset : 1627084_s_at
Accessions : protein= NP_610756; /// NP_725124; /// NP_725125; /// NP_788332;, nucleotide= NM_136912; /// NM_165873; /// NM_165874; /// NM_176152;
FlyMine data for FBgn0061197.
BioGrid reports that CG13164 interacts with CG4853 CG5987 CG31619 CG5445 CG7379 CG33507 .
VDRC has 3 RNAi stocks for FBgn0061197 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 22 of 4 0.00Down
Head7 ± 21 of 4 0.00Down
Eye11 ± 23 of 4 0.02Down
Thoracicoabdominal ganglion3 ± 20 of 4 0.00Down
Salivary gland5 ± 20 of 4 0.01Down
Crop8 ± 22 of 4 0.00Down
Midgut2 ± 00 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut9 ± 00 of 4 0.00Down
Heart4 ± 11 of 4 0.01Down
Fat body18 ± 62 of 4 0.03Down
Ovary1 ± 00 of 4 0.00Down
Testis3536 ± 964 of 4 6.30Up
Male accessory glands10 ± 11 of 4 0.00Down
Virgin spermatheca3 ± 00 of 4 0.01Down
Mated spermatheca1 ± 00 of 4 0.00Down
Adult carcass24 ± 52 of 4 0.00Down
Larval CNS7 ± 13 of 4 0.01Down
Larval Salivary gland2 ± 10 of 4 0.00Down
Larval midgut11 ± 12 of 4 0.02Down
Larval tubule8 ± 12 of 4 0.00Down
Larval hindgut8 ± 11 of 4 0.01Down
Larval fat body541 ± 2794 of 4 1.00None
Larval trachea21 ± 273 of 4 0.04Down
Larval carcass9 ± 11 of 4 0.02Down
S2 cells (growing)3 ± 00 of 4 0.01Down
Whole fly558 ± 294 of 4

Looking for CG13164-RE. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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