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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13176-RA through 18771 annotations produced 1 hits



CG13176 (wash):

Annotation Number : CG13176
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033692
Gbrowse : chr2R:8068144-8069838 (+) // 100.0 //
Probeset : 1637899_at
Accessions : protein= NP_610739;, nucleotide= NM_136895;
Pathway : open tracheal system // inferred from mutant phenotype /// 0048477 // oogenesis // inferred from mutant phenotype /// 0
Interpro : 0005667 // transcription factor complex // inferred from physical interaction
FlyMine data for FBgn0033692.
BDGP gene expression has embryonic in situ data for CG13176: 8 pix of staining in 1 body parts.
BioGrid reports that CG13176 interacts with CG5680 .
VDRC has 3 RNAi stocks for FBgn0033692 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 ± 24 of 4 0.40Down
Head74 ± 24 of 4 0.60Down
Eye51 ± 44 of 4 0.38Down
Thoracicoabdominal ganglion59 ± 24 of 4 0.40Down
Salivary gland99 ± 84 of 4 0.75Down
Crop137 ± 54 of 4 1.00None
Midgut50 ± 14 of 4 0.40Down
Tubule95 ± 44 of 4 0.70Down
Hindgut95 ± 34 of 4 0.70Down
Heart59 ± 44 of 4 0.45Down
Fat body85 ± 64 of 4 0.64Down
Ovary141 ± 64 of 4 1.10None
Testis739 ± 144 of 4 5.60Up
Male accessory glands72 ± 14 of 4 0.50Down
Virgin spermatheca68 ± 44 of 4 0.52Down
Mated spermatheca75 ± 64 of 4 0.57Down
Adult carcass84 ± 34 of 4 0.60Down
Larval CNS51 ± 74 of 4 0.39Down
Larval Salivary gland116 ± 44 of 4 0.88None
Larval midgut65 ± 24 of 4 0.49Down
Larval tubule71 ± 24 of 4 0.50Down
Larval hindgut68 ± 44 of 4 0.51Down
Larval fat body127 ± 154 of 4 1.00None
Larval trachea51 ± 104 of 4 0.38Down
Larval carcass61 ± 34 of 4 0.46Down
S2 cells (growing)121 ± 14 of 4 0.91None
Whole fly133 ± 54 of 4

Looking for CG13176-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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